Reproducibility is a cornerstone of the scientific method. There are systems available today to build reproducible and sharable data and analysis pipelines including workflow engines (e.g., GWL, Nextflow), package managers (e.g., bioconda), and container systems (e.g., Singularity). However, validating their executions on high-performance computers remains an open issue. Indeed, there are many …
Supervisors: Philippe Bonnet
Semester: Fall 2020
Tags: ML, reproducibility, workflow, HPC